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Yan, J., Kandianis, C. B., Harjes, C. E., Bai, L., Kim, E-H., Yang, X., Skinner, D. J., Fu, Z., Mitchell, S. E., Li, Q., Salas Fernandez, M. G., Zaharieva, M., Babu1, R., Fu, Y., Palacios, N., Li, J., DellaPenna, D., Brutnell, T., Buckler, E. S., Warburton, M. L., Rocheford, T. (2010) Rare genetic variation at Zea mays crtRB1 increases β-carotene in maize grain. Nature Genetics 10.1038/ng 551 PDF

Zhang, N., Gur, A., Gibon, Y., Sulpice, R., Flint-Garcia, S., McMullen, M.D., Stitt, M., Buckler, E.S. (2010) Genetic Analysis of Central Carbon Metabolism Unveils an Amino Acid Substitution That Alters Maize NAD-Dependent Isocitrate Dehydrogenase Activity. PLoS ONE 5(4): e9991. PDF

Krill, A.M., Kirst, M., Kochian, L.V., Buckler, E.S., Hoekenga, O.A. (2010) Association and Linkage Analysis of Aluminum Tolerance Genes in Maize. PLoS ONE 5(4): e9958. PDF

Zhang, Z., Ersoz, E., Lai, C-Q., Todhunter R.J, Tiwari, H.K., Gore, M.A., Bradbury, P.J., Yu, J., Arnett, D.K., Ordovas, J.M., Buckler, E.S. (2010) Mixed linear model approach adapted for genome-wide association studies. Nature Genetics 10.1038/ng.546. PDF SAS code

Myles S., Chia J.-M., Hurwitz B., Simon C., Zhong G.Y., Buckler, E.S., Ware, D. (2010) Rapid Genomic Characterization of the Genus Vitis. PLoS ONE 5(1): e8219. PDF

Zhang, Z., Buckler, E.S., Casstevens, T.M., Bradbury, P.J. (2009) Software engineering the mixed model for genome-wide association studies on large samples. Briefings in Bioinformatics 10(6):664-675. PDF

Yan, J., Shah, T., Warburton, M.L., Buckler, E.S., McMullen, M.D., Crouch, J. (2009). Genetic Characterization and Linkage Disequilibrium Estimation of a Global Maize Collection Using SNP Markers. PLoS ONE 4(12): e8451. PDF

Gore, M.A., Chia, J.-M., Elshire, R.J., Sun, Q. , Ersoz, E.S., Hurwitz, B.L., Peiffer, J.A., McMullen, M.D., Grills, G.S., Ross-Ibarra, J., Ware, D.H., Buckler, E.S. 2009. A First-Generation Haplotype Map of Maize. Science 326: 1115-1117. PDF

Myles S., Peiffer J., Brown P.J., Ersoz E.S., Zhang Z., Costich D.E., Buckler E.S. (2009) Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design. Plant Cell 21:2194-2202 PDF

Pressoir, G., Brown, P.J., Zhu, W., Upadyayula, N., Rocheford, T., Buckler, E.S. IV, and Kresovich, S. 2009. Natural variation in maize architecture is mediated by allelic differences at the PINOID co-ortholog barren inflorescence2. The Plant Journal 58:4, 618-628. PDF

Buckler, E.S., Holland, J.B., Bradbury, P.J., Acharya, C. B., Brown, P.J., Browne, C., Ersoz, E., Flint-Garcia, S., Garcia, A., Glaubitz, J.C., Goodman, M.M., Harjes, C., Guill, K., Kroon, D.E., Larsson, S., Lepak, N.K., Li, H., Mitchell, S.E., Pressoir, G., Peiffer, J. A., Rosas, M.O., Rocheford, T.R., Romay, M.C., Romero, S., Salvo, S., Villeda, H.S., da Silva, H.S., Sun, Q., Tian, F., Upadyayula, N., Ware, D., Yates, H., Yu, J., Zhang, Z., Kresovich, S., McMullen M. D. 2009. The Genetic Architecture of Maize Flowering Time.
Science, 325: 714-718. PDF

McMullen, M.D., Kresovich, S., Villeda, H. S., Bradbury, P., Li, H., Sun, Q., Flint-Garcia, S., Thornsberry, J., Acharya, C. B., Bottoms, C., Brown, P., Browne, C., Eller, M., Guill, K., Harjes, C., Kroon, D., Lepak, N., Mitchell, S. E., Peterson, B., Pressoir, G., Romero, S., Rosas, M. O., Salvo, S., Yates, H., Hanson. M., Jones, E., Smith,S., Glaubitz, J. C., Goodman, M., Ware, D., Holland, J. B., Buckler, E. S. 2009. Genetic Properties of the Maize Nested Association Mapping Population. Science, 325: 737-740. PDF

Gore, M.A., Wright, M.H., Ersoz, E.S., Bouffard, P., Szekeres, E.S., Jarvie, T.P., Hurwitz, B.L., Narachania, A., Harkins, T.T., Grills, G.S., Ware, D.H., Buckler, E.S. 2009. Large-Scale Discovery of Gene-Enriched SNPs. The Plant Genome, 2: 121-133. PDF

Tian, F., Stevens, N.M., and Buckler, E.S. 2009. Tracking footprints of maize domestication and evidence for a massive selective sweep on chromosome 10. PNAS. 106: 9979-9986. PDF

Bernardo, A.N., Bradbury, P.J., Ma, H., Hu, S., Bowdens, R. L., Buckler, E. S., and Bai, G. 2009. Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays. Biomed Central Genomics. 10: 251. PDF

Yu, J., Zhang, Z., Zhu, C., Tabanoa, D.A., Pressior, G., Tuinstra, M.R., Kresovich, S., Todhunter, R.J., Buckler, E.S. 2009. Simulation Appraisal of the Adequacy of Number of Background Markers for Relationship Estimation in Association Mapping. The Plant Genome 2: 63-77. PDF

Weber, A.L., Briggs, W.H., Rucker, J., Baltazar, B.M., Sanchez-Gonzalez, J.D., Feng, P., Buckler, E.S., and Doebley, J.F. (2008). The Genetic Architechture of Complex Traits in Teosinte (Zea mays ssp. parviglumis): New Evidence from Association Mapping. Genetics PDF

Zhu, C., Gore, M., Buckler, E.S., and Yu, J. (2008). Status and Prospects of Association Mapping in Plants. Plant Genome 1: 5-20. PDF

Ersoz, E.S., J. Yu, and E.S. Buckler. 2008. Applications of linkage disequilibrium and association mapping in maize, In A. Kriz and B. Larkins, eds. Molecular Genetic Approaches to Maize Improvement. Springer. PDF

Harjes, C.E., Rocheford, T.R., Bai, L., Brutnell, T.P., Kandianis, C.B., Sowinski, S.G., Stapleton, A.E., Vallabhaneni, R., Williams, M., Wurtzel, E.T., Yan, J.B. and Buckler, E.S. (2008). Natural genetic variation in lycopene epsilon cyclase tapped for maize biofortification. Science 319: 330-333. PDF

Liang, C.Z., Jaiswal, P., Hebbard, C., Avraham, S., Buckler, E.S., Casstevens, T., Hurwitz, B., McCouch, S., Ni, J.J., Pujar, A., Ravenscroft, D., Ren, L., Spooner, W., Tecle, I., Thomason, J., Tung, C.W., Wei, X.H., Yap, I., Youens-Clark, K., Ware, D., and Stein, L. (2008). Gramene: a growing plant comparative genomics resource. Nucleic Acids Research 36: D947-D953. PDF

Canaran, P., Buckler, E.S., Glaubitz, J.C., Stein, L., Sun, Q., Zhao, W. and Ware, D (2008). Panzea: an update on new content and features. Nucleic Acids Research 36: D1041-D1043. PDF

Stich, B., Maohringy, J., Piepho, H.P., Buckler, E.S., and Melchinger, A.E. (2008). Comparison of mixed-model approaches for association mapping. Genetics PDF

Yu, J., Holland, J.B., McMullen, M.D., and Buckler, E.S. (2008). Genetic Design and Statistical Power of Nested Association Mapping in Maize. Genetics 178: 539-551. PDF

Esch, E., Szymaniak, J.M., Yates, H., Pawlowski, W.P., and Buckler, E.S. (2007). Using crossover breakpoints in recombinant inbred lines to identify quantitative trait loci controlling the global recombination frequency. Geneitcs 177: 1851-1858. PDF

Hamblin, M.T., Warburton, M.L., and Buckler, E.S. (2007). Empirical Comparison of Simple Sequence Repeats and Single Nucleotide Polymorphisms in Assessment of Maize Diversity and Relatedness. PLoS ONE 2: e1367. PDF

Buckler, E., and Gore, M. (2007). An Arabidopsis haplotype map takes root. Nature Genetics 39: 1056-1057. PDF

Bradbury, P.J., Zhang, Z., Kroon, D.E., Casstevens, R.M., Ramdoss, Y., and Buckler, E.S. 2007. TASSELL Software for association mapping of complex traits in diverse samples. Bioinformatics 23: 2633-2635. PDF

Gore M, Bradbury P, Hoger R, Kirst M, Verstege E, Oeveren Jv, Peleman J, Buckler E, Eijk Mv 2007. Evaluation of target preparation methods for single feature polymorphism detection in large complex plant genomes. The Plant Genome 47: S135-148. PDF

Zhang Z, Todhunter RJ, Buckler ES, Vleck LDV 2007. Use of Marker Based Relationships with MTDFREML. Journal of Animal Science 85: 881-885. PDF

Ersoz ES, Yu J, Buckler ES 2007. Applications of linkage disequilibrium and association mapping in crop plants. Genomics Assisted Crop Improvement Vol. 1: Genomics Approaches and Platforms (eds. R.K. Varshney and R. Tuberosa), pp. 97-119. PDF

Stich B, Yu J, Hans P. Maurer, Melchinger AE, Utz HF, Buckler ES 2007. Power to Detect Higher-Order Epistatic Interactions in a Metabolic Pathway Using Nested Association Mapping and Diallel Association Mapping Genetics 176: 563-570. PDF

Yu, J., Pressoir, G., Briggs, W.H., Bi, I.V., Yamasaki, M., Doebley, J.F., McMullen, M.D., Gaut, B.S., Holland, J.B., Kresovich, S., and Buckler, E.S. 2006. A Unified Mixed-Model Method for Association Mapping Accounting for Multiple Levels of Relatedness. Nature Genetics 38: 203-208. PDF

Jianming Yu and Edward S Buckler. 2006. Genetic association mapping and genome organization of maize. Current Opinion in Biotechnology 17:155–160 PDF

William F. Tracy, Sherry R. Whitt, and Edward S. Buckler. 2006. Recurrent Mutation and Genome Evolution: Example of Sugary1 and the Origin of Sweet Maize. The Plant Genome 46: 1-6 PDF

Matias Kirst, Rico Caldo, Paula Casati, Gene Tanimoto, Virginia Walbot, Roger P. Wise, and Edward S. Buckler. 2006. Genetic diversity contribution to errors in short oligonucleotide microarray analysis. Plant Biotechnology Journal 4:489–498 PDF

Buckler, E. S., B. S. Gaut, M. D. McMullen. 2006. Molecular and Functional Diversity of Maize. Current Opinions in Plant Biol. PDF

Buckler, E. S., M. M. Goodman, T. P. Holtsford, J. F. Doebley, and J. Sanchez G. 2006. The phylogeography of Zea mays. Maydica. PDF

Szalma, S. J., E. S. Buckler, M. E. Snook, and M. D. McMullen. 2005. Association analysis of flavonoid structural loci for maysin and chlorogenic acid synthesis in maize silks. Theoretical and Applied Genetics 110:1324 - 1333. PDF

Fukunaga, K., J. Hill, Y. Vigouroux, Y. Matsuoka, J.S. G., K. Liu, E.S. Buckler, and J. Doebley. 2005. Genetic diversity and population structure of teosinte. Genetics 169: 2241-2254. PDF

Buckler, E.S. and N.M. Stevens*. 2005. Maize Origins, Domestication, and Selection. In Darwin's Harvest (eds. T.J. Motley N. Zerega, and H. Cross), pp. 67-90. Columbia University Press, New York. PDF

Vollbrecht E, Springer P, Goh L, Buckler ES and RA Martienssen. 2005. Architecture of floral branch systems in maize and related grasses. Nature 436: 1119-1126. PDF

Flint-Garcia, S.A., A.-C. Thuillet, J.M. Yu, G. Pressoir, S.M. Romero, S.E. Mitchell, J. Doebley, S. Kresovich, M.M. Goodman, and E.S. Buckler. 2005. Maize association population: a high resolution platform for QTL dissection. Plant Journal 44: 1054-1064. PDF

Jaiswal, P., J. Ni, I. Yap, D. Ware, W. Spooner, K. Youens-Clark, L. Ren, C. Liang, W. Zhao, K. Ratnapu, B. Faga, P. Canaran, M. Fogleman, C. Hebbard, S. Avraham, S. Schmidt, T.M. Casstevens*, E.S. Buckler, L. Stein, and S. McCouch. 2006. Gramene: a bird's eye view of cereal genomes. Nucl. Acids Res. 34: D717-723. PDF

Zhao, W., P. Canaran, R. Jurkuta, T. Fulton, J. Glaubitz, E. Buckler, J. Doebley, B. Gaut, M. Goodman, J. Holland, S. Kresovich, M. McMullen, L. Stein, and D. Ware. 2006. Panzea: a database and resource for molecular and functional diversity in the maize genome. Nucl. Acids Res. 34: D752-757. PDF

Casstevens, T. M. and E. S. Buckler, IV. 2004. GDPC: Connecting Researchers with Multiple Integrated Dada Sources. Bioinformatics 20: 2839 – 2840. PDF

Wilson, L., S. Rinehart-Whitt, A. M. Ibanez, T. Rocheford, M. Goodman and E. S. Buckler, IV. 2004. Dissection of maize kernel composition and starch production by candidate gene association. Plant Cell 16: 2719-2733. PDF

Churchill, G.A., and Complex Trait Consortium. 2004. The Collaborative Cross, a community resource for the genetic analysis of complex traits. Nature Genetics 36: 1133-1137. PDF

Goode, M., K. Strimmer, A. Drummond, E. S. Buckler, and A. Rodrigo. 2004. A Brief Introduction to the Phylogenetic Analysis Library, Version 1.5. In Conferences in Research and Practice in Information Technology (Y.-P. P. Chen, ed.) 29:175-179. PDF

Liu, K., M. M. Goodman, S. V. Muse, J. S. Smith, E. S. Buckler, and J. F. Doebley. 2003. Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites. Genetics 165:2117-2128. PDF

Jaenicke-Després, Viviane, Edward S. Buckler, Bruce D. Smith, M. Thomas P. Gilbert, Alan Cooper, John Doebley, and Svante Pääbo. 2003. Early allelic selection in maize as revealed by ancient DNA. Science 302:1206-1208. PDF

Du, Chunguang, Edward Buckler, and Spencer Muse. 2003. Development of a maize molecular evolutionary genomic database. Comparative and Functional Genomics 4: 246-249. PDF

Whitt, S. R. and E. S. Buckler, IV. 2003. Using natural allelic diversity to evaluate gene function. In Plant Functional Genomics: Methods and Protocols (Grotewald, E., ed.). Humana Press.PDF

Flint-Garcia, S. A., J. M. Thornsberry, and E. S. Buckler, IV. 2003. Structure of linkage disequilibrium in plants. Annual Review of Plant Biology 54:357-374. PDF

Whitt, S. R., Larissa M. Wilson, Maud I. Tenaillon, Brandon S. Gaut and Edward S. Buckler, IV. 2002. Genetic diversity and selection in the maize statch pathway. Proc. Nat. Acad. Sci. USA 99: 12959-12962. PDF

Rauh, B, C. Basten, and E. S. Buckler, IV. 2002. Quantitative trait loci analysis of growth response to varying nitrogen sources in Arabidopsis. Theoretical and Applied Genetics 104: 743-750. PDF

Matusuoka, Yoshihiro, Yves Vigouroux, Major M.Goodman, Jesus Sanchez G., Edward S. Buckler, IV, and John Doebley. 2002. A single domestication for maize shown by multilocus microsatellite genotyping. Proc. Nat. Acad. Sci. USA 99: 6080-6084. PDF

Buckler, Edward S., IV, and J. Thornsberry. 2002. Plant moleculer diversity and applications to genomics. Current Opinion in Plant Biology 5: 107-111. PDF

Remington, D. L., J. Thornsberry, Y. Matsuoka, L. Wilson, S. Rinehart-Whitt, J. Doebley, S. Kresovich, M. M. Goodman, and E. S. Buckler, IV. 2001. Structure of linkage disequilibrium and phenotypic associations in the maize genome. Proc. Nat. Acad. Sci. USA 98: 11479-11484. PDF SAS script

Buckler, E. S., IV, J. M. Thornsberry, and Stephen Kresovich. 2001. Molecular diversity, structure and domestication of grasses. Genetical Research 77: 213-218. PDF

Thornsberry, J. M., M. M. Goodman, J. Doebley, S. Kresovich, D. Nielsen, and E. S. Buckler, IV. 2001. Dwarf8 polymorphisms associate with variation in flowering time. Nature Genetics 28: 286-289. PDF

Bennetzen, J., E. Buckler, IV, V. Chandler, J. Doebley, J. Dorweiler, B. Gaut, M. Freeling, S. Hake, E. Kellogg, R. S. Poethig, V. Walbot, and S. Wessler. 2001. Genetic evidence and the origin of maize. Latin American Antiquity 12:84-86.

Buckler, E. S., IV, T. L. Phelps, C. S. Keith Buckler, R. K. Dawe, J. F. Doebley, and T. P. Holtsford. 1999. Meiotic drive of chromosomal knobs reshaped the maize genome. Genetics 153:415-426. PDF

Lawton-Rauh, A. W., E. S. Buckler IV, and M. D. Purugganan. 1999. Patterns of molecular evolution among paralogous floral homeotic genes. Mol. Biol. Evol. 16: 1037-1045. PDF

Qing, L., E. S. Buckler IV, S. Muse, and J. C. Walker. 1999. Molecular evolution of type 1 serine/threonine protein phosphatases. Molecular Phylogenetics and Evolution 12: 57-66. [Abstract | Full Text in PDF]

Buckler, E. S., IV, D. M. Pearsall, and T. P. Holtsford. 1998. Climate, plant ecology, and Central Mexican Archaic subsistence. Current Anthropology 39: 152-164. [Abstract | Full Text in PDF]

Buckler, E. S., IV, A. Ippolito, and T. P. Holtsford. 1997. The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications. Genetics 145: 821-832. [Abstract l Full Text in PDF]

McCue, K. A., E. S. Buckler IV, and T. P. Holtsford. 1996. A hierarchical view of genetic structure in the rare annual plant Clarkia springvillensis (Onagraceae). Conservation Biol. 10: 1425-1434. PDF

Buckler, E. S., IV and T. P. Holtsford. 1996. Zea ribosomal repeat evolution and mutation patterns. Mol. Biol. Evol. 13: 612-622. PDF

Buckler, E. S., IV and T. P. Holtsford. 1996. Zea systematics: ribosomal ITS evidence. Mol. Biol. Evol. 13: 623-632. PDF

Buckler, E. S., IV, D. M. Pearsall, and T. P. Holtsford. 1994. Zinc iodide and centrifugation allow rapid, inexpensive phytolith separation. Phytolitharien Newsletter 8: 2-3. PDF