Package gov.usda.gdpc

This is the main package for The Genomic Diversity and Phenotype Connection (GDPC).

See:
Description

Interface Summary

DBConnection	Defines the low level interaction with a database.
DBElement	Element that came from a database.
DBElementGroup	List of database elements.
DBGateway	The single point of access to retrieve data from the database(s).
EnvironmentExperimentGroup	Collection of environment experiments.
Filter	Filter used to define search criteria when requesting data from a DBGateway.
FilterValue	This represents a value which is used to define the critera of a filter.
GenotypeExperimentGroup	Collection of genotype experiments.
GenotypeGroup	Group of genotypes.
Group	List of objects.
LocalityGroup	Collection of locality.
LocusGroup	Group of loci.
PhenotypeGroup	Group of phenotypes.
PhenotypeOntologyGroup	Collection of phenotype ontologys.
Property
Table	Table of objects.
TaxonGroup	Collection of taxa.

Class Summary

AbstractDBConnection	This class provides a skeletal implementation of the DBConnection interface, to minimize the effort required to implement this interface.
AbstractDBElement	This class provides a skeletal implementation of the DBElement interface to minimize the effort required to implement this interface.
AbstractDBElementGroup	This class provides a skeletal implementation of the DBElementGroup interface to minimize the effort required to implement this interface.
AbstractDBGateway	This class provides a skeletal implementation of the DBGateway interface to minimize the effort required to implement this interface.
AbstractEnvironmentExperimentGroup	This class provides a skeletal implementation of the EnvironmentExperimentGroup interface to minimize the effort required to implement this interface.
AbstractFilter	This class provides a skeletal implementation of the Filter interface to minimize the effort required to implement this interface.
AbstractFilterValue	This class provides a skeletal implementation of the DBConnection interface, to minimize the effort required to implement this interface.
AbstractGenotypeExperimentGroup	This class provides a skeletal implementation of the GenotypeExperimentGroup interface to minimize the effort required to implement this interface.
AbstractGenotypeGroup	This class provides a skeletal implementation of the GenotypeGroup interface to minimize the effort required to implement this interface.
AbstractGroup	This class provides a skeletal implementation of the Group interface to minimize the effort required to implement this interface.
AbstractLocalityGroup	This class provides a skeletal implementation of the LocalityGroup interface to minimize the effort required to implement this interface.
AbstractLocusGroup	This class provides a skeletal implementation of the LocusGroup interface to minimize the effort required to implement this interface.
AbstractPhenotypeGroup	This class provides a skeletal implementation of the PhenotypeGroup interface to minimize the effort required to implement this interface.
AbstractPhenotypeOntologyGroup	This class provides a skeletal implementation of the PhenotypeOntologyGroup interface to minimize the effort required to implement this interface.
AbstractProperty
AbstractTable	This class provides a skeletal implementation of the Table interface to minimize the effort required to implement this interface.
AbstractTaxonGroup	This class provides a skeletal implementation of the TaxonGroup interface to minimize the effort required to implement this interface.
AlleleList	List of alleles.
Chromosome
Convert
DefaultDBGateway	This is the default implementation of the database gateway.
DefaultEnvironmentExperimentGroup	This is the default implementation of a environment experiment group.
DefaultGenotypeExperimentGroup	This is the default implementation of a genotype experiment group.
DefaultGenotypeGroup	This is the default implementation of a genotype group.
DefaultLocalityGroup	This is the default implementation of a locality group.
DefaultLocusGroup	This is the default implementation of a locus group.
DefaultPhenotypeGroup	This is the default implementation of a phenotype group.
DefaultPhenotypeOntologyGroup	This is the default implementation of a phenotype ontology group.
DefaultTaxonGroup	This is the default implementation of a taxon group.
DistinctPropertyValues
EmptyTable	Convenience class to create an empty table.
EnvironmentExperiment	This is a database element representing an environment experiment.
EnvironmentExperimentFilter	This is an environment experiment filter.
EnvironmentExperimentProperty	This follows the enum pattern and represents a environment experiment property.
FilterLikeValue	This is a filter value which consists of a single string value which may contain the wild card(s) %, as a means of matching zero or more characters in that position.
FilterRangeValue	This is a filter value which consists of a range of values.
FilterSingleValue	This is a filter value which consists of a single value.
FilterValueType
Genotype	This is a database element representing a genotype.
GenotypeExperiment	This is a database element representing a genotype experiment.
GenotypeExperimentFilter	This is a genotype experiment filter.
GenotypeExperimentProperty	This follows the enum pattern and represents a genotype experiment property.
GenotypeFilter	This is a genotype filter.
GenotypeProperty	This follows the enum pattern and represents a genotype property.
GenotypeTable
Identifier	This is an identifier which should uniquely identify a database element for a given database element type (e.g.
Locality	This is a database element representing a locality.
LocalityFilter	This is a locality filter.
LocalityProperty	This follows the enum pattern and represents a locality property.
Locus	This is a database element representing a locus.
LocusFilter	This is a locus filter.
LocusProperty	This follows the enum pattern and represents a locus property.
Phenotype	This is a database element representing a phenotype.
PhenotypeFilter	This is a phenotype filter.
PhenotypeOntology	This is a database element representing a phenotype ontology.
PhenotypeOntologyFilter	This is a pheontype ontology filter.
PhenotypeOntologyProperty	This follows the enum pattern and represents a phenotype ontology property.
PhenotypeProperty	This follows the enum pattern and represents a phenotype property.
PhenotypeTable
PrintProperties
Taxon	This is a database element representing a taxon.
TaxonFilter	This is a taxon filter.
TaxonProperty	This is follows the enum pattern and represents a taxon property.

Package gov.usda.gdpc Description

This is the main package for The Genomic Diversity and Phenotype Connection (GDPC). It provides the classes for the genomic and phenotypic data elements, filters, groups, and etc.