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Too often, reseach projects on genomic diversity and phenotypes have generated valuable data collections which tend only to be abandoned after results are published. Ideally, this data would be made widely available by migrating the data to larger, public databases. We have built some of the infrastructure to store that data and make it publicly available:
GDPDM - The Genomic Diversity and Phenotype Data Model (GDPDM) captures both Molecular and Phenotypic Diversity data. We plan to use this model for a number of purposes including an in-house database, data upload tools, GDPC middleware. The main focus of this schema is to hold quantitative phenotypic data and molecular genotypic data. This data may be the product of QTL mapping, an association study, breeding efforts, or germplasm evaluation.
GDPC - The Genomic Diversity and Phenotype Connection (GDPC) simplifies access to genomic diversity and phenotype data, thereby encouraging reuse of this data. GDPC accomplishes this by retrieving data from one or more data sources and by allowing researchers to analyze integrated data in a standard format. GDPC provides access to genomic diversity data such as SNPs, SSRs, sequences, etc. and phenotypic data that may be collected in field, genetic, or physiological experiments.
Websites - Panzea and Gramene
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